Differential Glycosite Profiling—A Versatile Method to Compare Membrane Glycoproteomes

Glycosylation is the most prevalent and varied form of post-translational protein modifications. Protein glycosylation regulates multiple cellular functions, including protein folding, cell adhesion, molecular trafficking and clearance, receptor activation, signal transduction, and endocytosis. In particular, membrane proteins are frequently highly glycosylated, which is both linked to physiological processes and of high relevance in various disease mechanisms. The cellular glycome is increasingly considered to be a therapeutic target. Here we describe a new strategy to compare membrane glycoproteomes, thereby identifying proteins with altered glycan structures and the respective glycosites. The workflow started with an optimized procedure for the digestion of membrane proteins followed by the lectin-based isolation of glycopeptides. Since alterations in the glycan part of a glycopeptide cause mass alterations, analytical size exclusion chromatography was applied to detect these mass shifts. N-glycosidase treatment combined with nanoUPLC-coupled mass spectrometry identified the altered glycoproteins and respective glycosites. The methodology was established using the colon cancer cell line CX1, which was treated with 2-deoxy-glucose—a modulator of N-glycosylation. The described methodology is not restricted to cell culture, as it can also be adapted to tissue samples or body fluids. Altogether, it is a useful module in various experimental settings that target glycan functions.     

Amperometric enzyme electrode for glucose determination based on poly(pyrrole-2-aminobenzoic acid)

Polymerization of pyrrole and 2-aminobenzoic acid has been investigated, and a functionalized stable film of poly(pyrrole-2-aminobenzoic acid) (PP2ABA) has been obtained electrochemically onto platinum electrode. Different cyclic voltammetric behavior is obtained for polypyrrole and PP2ABA during electrosynthesis. Fourier-transformed infrared spectrometry and surface-enhanced Raman spectrometry measurements on the two films have confirmed the presence of carboxylate group in the films. The enzyme, glucose oxidase, was covalently immobilized on a conducting PP2ABA film, and amperometric response was measured as a function of concentration of glucose at a potential of 0.7 V vs Ag/AgCl in 0.1 M phosphate buffer at pH 6.2. The effect of polymeric film thickness, pH, and possible interferents were investigated. The linear range of the calibration curve is from 3 to 40 mM with a sensitivity of 0.058 μA mM⁻¹ cm⁻² and a limit of detection of 0.5 mM. The apperent Mishaelis–Menten constant K _M is calculated to be 1 × 10⁻² mM, and the response time is 5 s.     

Toward standardization of quality assessment in laboratory medicine by using the same matrix samples for both internal and external quality assessments

The main purpose of quality assurance procedures in clinical laboratories is to ensure that test results are appropriate to maintain excellence in the diagnosis, monitoring, and treatment of disease. However, in current practice, no standardized procedure or frequency for the evaluation of methods exists, particularly in external quality assessment. Furthermore, different quality control materials are typically used for internal and external quality assessment. To overcome these discrepancies, we used samples with the same matrix for both internal and external quality assessments of a group test performed in our laboratory. We then calculated total error using real bias (target value obtained by reference method) and the imprecision of each test and compared our results with the total error allowable, derived from biological variation data. We suggest that the strategy of using the same matrix samples for both internal and external quality assessment is cost-effective, can be readily used by staff, and will facilitate the standardization of quality control in clinical laboratories.     

Synthesis and characterization of a new dyestuff polymer soluble in alkaline aqueous media

Novel dyestuff polymers were successfully obtained through oxidative polymerization technique. The synthesized Schiff base and its polymer were soluble in alkaline＇aqueous medium and they have various colors in different solutions. Also, it can be said that the synthesized compounds are suitable as coloring agent （dyestuff） for textile applications. Fluorescence properties of the compounds were determined in DMF with different concentrations （mg/L）. Poly-tris（4- aminophenyl）methanol （P-TAPM） has quite high emission and excitation intensity values. Optical and electrochemical band gaps of the polymers were lower than those of the monomers indicating the more conjugated structure of the polymers. The oxidized states of the novel dyestuff compounds were examined by cyclic voltammetry （CV） technique. The solid state conductivity measurements showed that the synthesized polymers were semiconductors when exposed to the iodine vapour their conductivities could be increased. P-TAPM had the highest undoped conductivity. Thermal characterizations of the synthesized compounds were carried out by TG-DTA and DSC methods.     

SYNTHESIS,CHARACTERIZATION,THERMAL DEGRADATION AND ELECTRICAL CONDUCTIVITY OF OLIGO[2-(THIEN-2-YL- METHYLENE)AMINOPHENOL] AND OLIGOMER-METAL COMPLEXES

The optimum reaction conditions of the oxidative polycondensation of 2-(thien-2-yl-methylene)aminophenol (2-TMAP) has been accomplished by using air O_2,H_2O_2 and NaOCl oxidants in an aqueous alkaline medium between 20℃and 90℃.The structures of the monomer and oligomer were confirmed by FT-IR,UV-Vis,~1H-NMR and ~(13)C-NMR and elemental analysis.TGA-DTA,size exclusion chromatography(SEC) techniques and solubility tests were applied for characterization.The ~1H-NMR and ~(13)C-NMR data show that the polyme...     

Selective Recognition of Cobalt (II) Ion by a New Cryptand Compound with N2O2S2 Donor Atom Possessing 2-Hydroxy-1-Naphthylidene Schiff Base Moiety

A new cryptand compound carrying 2-hydroxy-1-naphthylidene Schiff base moiety (3) was designed and synthesized by reaction of the corresponding macrobicyclic amine compound (1) and 2-hydroxy-1-naphthaldehyde (2). The influence of metal cations such as Mg²⁺, Ca²⁺, Sr²⁺, Fe²⁺,Co²⁺, Mn²⁺, Zn²⁺, Cd²⁺, Hg²⁺, Al³⁺ and Pb²⁺ on the spectroscopic properties of the new fluoroionophore was investigated in acetonitrile-dichloromethane solution (9.5/0.5) by means of absorption and emission spectrometry. The blue shifts on the fluorescence spectrum were observed for all metal cations at 504nm. At the same time the fluorescence spectrum of the ligand showed quenching in the intensity of the signal at 504 nm for all metal cations except for Zn²⁺. Interaction of Co²⁺ with the ligand caused quenching of naphtyl fluorescence higher than 84%. The method showed good selectivity and sensitivity for Co²⁺ with respect to other metal cations with linear range and detection limit of 1.5 × 10⁻⁷ to 3.3 × 10⁻⁶M and 4.8 × 10⁻⁸M respectively.     

A novel method for the simultaneous determination of Pb (II), Cd (II) and Zn (II) in environmental water samples

A novel UV-VIS spectrophotometric method was developed in this study by using solid phase extraction procedure for the simultaneous preconcentration, separation and determination of trace levels of Pb (II), Cd (II) and Zn (II) ions in various water samples by using Amberlite N,N-bis(salicylidene)cyclohexanediamine (SCHD) resin. This study presents the results of experimental procedures carried out like the adsorption of analytes to the resin, influences of some analytical parameters that effect the recovery such as pH, sample volume, sample flow rate, eluent type and concentration, eluent volume, eluent flow rate and the effects of alkaline metals, earth alkaline metals and some other transition metals. The analytes in the samples with the adjusted pH range of 4–7 were adsorbed on XAD-4-SCHD resin and eluted by using 1.0 mol L^?1 nitric acid. The amounts of ions were determined by using UV-VIS spectrometer. The limits of detection were 0.03, 0.07 and 0.05 µg mL^?1 for Pb (II), Cd (II) and Zn (II), respectively. The accuracy of the method was assured by the analysis of the certified standard water sample NW-TMDA-70.2 and the observed recoveries were above 93%. Different environmental water samples that contain trace amounts of Pb (II), Cd (II) and Zn (II) were analysed by using the method developed in this study. Same samples were also analysed by ICP-MS for comparison and almost the similar results were observed. The method developed in this study was successfully applied to the various environmental water samples to determine the trace levels of Pb (II), Cd (II) and Zn (II) ions.